AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
November 02, 2019 10:08PM
Hi Paul,

There is a "3ddot -dodice" command in your proc script now, that gets the coefficient between the EPI and anat masks. So this one would compute it between the anat and group (template) masks, as in: 

3ddot -dodice mask_anat.$subj+tlrc mask_group+tlrc \
      |& tee out.mask_at_dice.txt

That is what the command will look like in an updated script. The "at" is short for anat/template.

Does that seem reasonable?

- rick
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Subject Author Posted

Dice coef for warped anatomical and template brain?

paul.hamilton November 01, 2019 02:07PM

Re: Dice coef for warped anatomical and template brain?

rick reynolds November 01, 2019 05:39PM

Re: Dice coef for warped anatomical and template brain?

paul.hamilton November 02, 2019 09:38AM

Re: Dice coef for warped anatomical and template brain?

rick reynolds November 02, 2019 10:08PM

Re: Dice coef for warped anatomical and template brain?

paul.hamilton November 03, 2019 03:20PM