AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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James Waltz
November 05, 2019 10:26AM
Hi-

Including the options:

-cost lpc+ZZ -ginormous_move

fixed 4 out of 5 alignments.

My version of AFNI is too old to include -align_opts_aea as an option.

There is still an offending data set, and I was wondering if I could share it with you, along with my script.

This is a script that my data analyst developed about 5 years ago (she has since moved one). I think it was developed with afni_proc.py, but I have since split it up into multiple scripts, so that I can check the results of the individuals steps.

These are brains from adolescents and young adults, who move a lot.

Thanks,

Jim Waltz
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Subject Author Posted

align_epi_anat.py causes my brain to become UNALIGNED

James Waltz November 04, 2019 06:47PM

Re: align_epi_anat.py causes my brain to become UNALIGNED

ptaylor November 04, 2019 08:52PM

Re: align_epi_anat.py causes my brain to become UNALIGNED

James Waltz November 05, 2019 10:26AM

Re: align_epi_anat.py causes my brain to become UNALIGNED

ptaylor November 06, 2019 11:17AM