Hello,
I'm having trouble with the script (which is the following):
3dDeconvolve -force_TR 2 -input scaled_allruns+orig -mask retrieval_mask+orig -concat '1D: 0 60 120 180 240 300' \
-polort 1 \
-num_stimts 4 \
-stim_times 1 stimtimes_list.txt 'BLOCK(2,1)' \
-stim_times 2 stimtimes_write.txt 'BLOCK(2,1)' \
-stim_times 3 stimtimes_draw.txt 'BLOCK(2,1)' \
-stim_times 4 stimtimes_new.txt 'BLOCK(2,1)' \
-stim_label 1 write_tar \
-stim_label 2 list_tar \
-stim_label 3 draw_tar \
-stim_label 4 new_tar \
-gltsym 'SYM: draw_tar -write_tar' \
-gltsym 'SYM: draw_tar -list_tar' \
-gltsym 'SYM: draw_tar -new_tar' \
-gltsym 'SYM: list_tar -write_tar' \
-gltsym 'SYM: list_tar -new_tar' \
-gltsym 'SYM: write_tar -new_tar' \
-glt_label 1 draw_write \
-glt_label 2 draw_list \
-glt_label 3 draw_new \
-glt_label 4 list_write \
-glt_label 5 list_new \
-glt_label 6 write_new \
-fitts fitts_event \
-fout -tout -rout -bucket decon_sa_event \
-x1D X.xmat.1D -xjpeg X.jpg
This is the error I am getting:
** -stim_times NOTE ** guessing GLOBAL times if 1 time per line; LOCAL otherwise
++ ** GUESSED ** -stim_times 1 using LOCAL times
*+ WARNING: '-stim_times 1' (LOCAL) run#6 has 5 times outside range 0 .. -2 [PSFB syndrome]
+ dataset TR being used is 2 s -- unusable times follow
6 16 26 47 81
++ ** GUESSED ** -stim_times 2 using LOCAL times
*+ WARNING: '-stim_times 2' (LOCAL) run#6 has 4 times outside range 0 .. -2 [PSFB syndrome]
+ dataset TR being used is 2 s -- unusable times follow
33 37 53 72
++ ** GUESSED ** -stim_times 3 using LOCAL times
*+ WARNING: '-stim_times 3' (LOCAL) run#6 has 5 times outside range 0 .. -2 [PSFB syndrome]
+ dataset TR being used is 2 s -- unusable times follow
19 42 63 90 103
++ ** GUESSED ** -stim_times 4 using LOCAL times
*+ WARNING: '-stim_times 4' (LOCAL) run#6 has 14 times outside range 0 .. -2 [PSFB syndrome]
+ dataset TR being used is 2 s -- unusable times follow
11 40 61 67 69 74 85 87 92 98 100 109 114 118
------------------------------------------------------------
GLT matrix from 'SYM: draw_tar -write_tar':
0 0 0 0 0 0 0 0 0 0 0 0 -1 0 1 0
------------------------------------------------------------
GLT matrix from 'SYM: draw_tar -list_tar':
0 0 0 0 0 0 0 0 0 0 0 0 0 -1 1 0
------------------------------------------------------------
GLT matrix from 'SYM: draw_tar -new_tar':
0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1
------------------------------------------------------------
GLT matrix from 'SYM: list_tar -write_tar':
0 0 0 0 0 0 0 0 0 0 0 0 -1 1 0 0
------------------------------------------------------------
GLT matrix from 'SYM: list_tar -new_tar':
0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 -1
------------------------------------------------------------
GLT matrix from 'SYM: write_tar -new_tar':
0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 -1
** FATAL ERROR: 3dDeconvolve dies: Invalid -concat input: 300
** Program compile date = Sep 13 2019
One thing to note is that there is a row that has an asterisk (*) in the txt file, as there was an error when recording that block so I am excluding the stimtimes for that block.
