AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 20, 2019 10:55AM
Further update / solution, in case there are others trying to convert a Freesurfer annotation to SUMA surfaces.

The issue arose because Freesurfer's annotation values are so massive (almost all are greater than 32767). I used 3dRank to lower the annotation values to something more reasonable, which gave me the expected 3dROIstats output.

Thanks to Pete Molfese for the suggestion!

EDIT:

for hh in "lh" "rh"
	3dRank \
		-prefix std.60.Schaefer2018_400Parcels_17Networks_ranked.${hh}.niml.dset \
		-input std.60.${hh}.Schaefer2018_400Parcels_17Networks_order.${hh}.niml.dset
done



Edited 1 time(s). Last edit at 11/20/2019 11:41AM by dmoracze.
Subject Author Posted

Surface parcellation in SUMA

dmoracze November 13, 2019 04:26PM

Re: Surface parcellation in SUMA Attachments

dmoracze November 13, 2019 05:14PM

Re: Surface parcellation in SUMA

dmoracze November 18, 2019 11:40AM

Re: Surface parcellation in SUMA

dmoracze November 20, 2019 10:55AM

Re: Surface parcellation in SUMA

dmoracze March 05, 2020 01:59PM

Re: Surface parcellation in SUMA

anthonystevendick April 20, 2020 02:00PM

Re: Surface parcellation in SUMA

Daniel Glen April 20, 2020 06:04PM