History of AFNI updates  

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November 14, 2019 06:53PM
Sure! This is the most recent version I've run (I've played around with some of the options but haven't had any success).

afni_proc.py -subj_id $subj \
-copy_anat $pre_anat_dir/OutBrick_run_00?+orig.BRIK \
-dsets $pre_RS_dir/OutBrick_run_00?+orig.BRIK \
-blocks despike tshift align tlrc volreg blur mask regress \
-tcat_remove_first_trs 2 \
-tlrc_base MNI152_T1_2009c+tlrc \
-tlrc_NL_warp \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-volreg_tlrc_warp \
-blur_size 4.0 \
-aligh_opts_aea -cost lpa -big_move \
-mask_epi_anat yes \
-regress_anaticor_fast \
-regress_censor_motion 0.3 \
-regress_bandpass 0.01 0.1 \
-regress_apply_mot_types demean deriv \
-regress_motion_per_run \
-regress_est_blur_errts \
-regress_run_clustsim no
end
Subject Author Posted

EPI and anat are not aligned after using dimon to convert dicom files to afni format

erobbins105 November 14, 2019 01:40PM

Re: EPI and anat are not aligned after using dimon to convert dicom files to afni format

Peter Molfese November 14, 2019 04:47PM

Re: EPI and anat are not aligned after using dimon to convert dicom files to afni format

erobbins105 November 14, 2019 06:53PM

Re: EPI and anat are not aligned after using dimon to convert dicom files to afni format Attachments

erobbins105 November 18, 2019 10:46AM

Re: EPI and anat are not aligned after using dimon to convert dicom files to afni format

Peter Molfese November 18, 2019 12:21PM

Re: EPI and anat are not aligned after using dimon to convert dicom files to afni format

erobbins105 November 19, 2019 02:04PM