History of AFNI updates  

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November 18, 2019 12:21PM
The screenshot looks like you're showing the direct DICOM converted datasets. It's rare that I'd expect to see those in perfect alignment just due to the sheer number of ways of interpreting coordinates from a DICOM file. The image that you might want to look at are the pb03 or pb04 within the results folder which should include the align step. If you're still not seeing good alignment then you might consider adding these to your afni_proc.py command.

-align_opts_aea -giant_move -cost lpc+ZZ
Subject Author Posted

EPI and anat are not aligned after using dimon to convert dicom files to afni format

erobbins105 November 14, 2019 01:40PM

Re: EPI and anat are not aligned after using dimon to convert dicom files to afni format

Peter Molfese November 14, 2019 04:47PM

Re: EPI and anat are not aligned after using dimon to convert dicom files to afni format

erobbins105 November 14, 2019 06:53PM

Re: EPI and anat are not aligned after using dimon to convert dicom files to afni format Attachments

erobbins105 November 18, 2019 10:46AM

Re: EPI and anat are not aligned after using dimon to convert dicom files to afni format

Peter Molfese November 18, 2019 12:21PM

Re: EPI and anat are not aligned after using dimon to convert dicom files to afni format

erobbins105 November 19, 2019 02:04PM