Thanks Gang!
Sorry my second question wasn't clear but you basically interpreted it correctly. That's what I thought as well (it not being feasible at the event related level) but it's nice to have it confirmed.
Two final questions: I've used PROC_PY to generate my preprocessing scripts for the first analysis run-through. For the final analysis I am using 3dREMLfit to get my stats but I notice my REML command, as generated by PROC, uses the Xmat created by the previous 3dDeconvolve command as I've copied below.
3dREMLfit -matrix X.xmat.1D \
-input "pb05.sub-S08V1A.r01.scale+tlrc.HEAD pb05.sub-S08V1A.r02.scale+tlrc.HEAD pb05.sub-S08V1A.r03.scale+tlrc.HEAD" \
-tout -Rbuck stats.sub-S08V1A_REML -Rvar stats.sub-S08V1A_REMLvar \
-Rerrts errts.sub-S08V1A_REML -verb $*
So I just wanted to check: 1) When I re-run new code using the
-stim_times_IM
option do I need to rerun 3dDeconvolve with the
-stim_times_IM
option, 3dREMLfit with the option, or both?
2) Even though I ultimately will be using this output for an ROI analysis, I would still use the same input files as above, correct? These are whole-brain files. I'm assuming that I rerun whole-brain deconvolution with the new options then extract the ROI betas from the new output just like a "regular" ROI analysis.
Thank you for all of your help!
Lauren