AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 26, 2019 09:27AM
Hello afni gurus,

Is there a straightforward way to build a square-wave response model (no convolution) by reading stimtimes from a file?

I am modeling a number of tasks with a mixed block-event design. Onset and offset of task blocks vary across tasks and subjects. Currently, I am using -stim_times_AM1 blocktimes.txt with 'dmBLOCK(1)' to model the sustained signal, and a set of TENT functions to model the transients associated with block onset and offset. But instead of the ramping inherent to the BLOCK() function, I would like to have the sustained model start instantaneously when the transient model returns to baseline, so that all variance at onset/offset is attributed to transient, and so that there's no 'gap' between sustained and transient.

I've fooled around with waver (e.g., waver -EXPR "step(t-4)*step(12-t)" -peak 1 | 1dplot -stdin ), but I have not found a way to build a square wave by using waver while reading stimulus times from a file. It would be great if there were a simple way to do this (or a programmatic way to do something similar on the command line); otherwise it's not the biggest deal.

Thanks for any thoughts y'all have.
Subject Author Posted

square-wave response model (no convolution) by reading stimtimes from a file?

freund November 26, 2019 09:27AM

Re: square-wave response model (no convolution) by reading stimtimes from a file?

freund December 06, 2019 10:42AM

Re: square-wave response model (no convolution) by reading stimtimes from a file?

gang December 06, 2019 11:24AM

Re: square-wave response model (no convolution) by reading stimtimes from a file?

rick reynolds December 10, 2019 03:13PM