Hello,
I am attempting to open a thresholded functional map of task-related activity on the MNI template. The analyses were run with the structural template from ANTs, Kirby (https://figshare.com/articles/ANTs_ANTsR_Brain_Templates/915436). The map I am trying to open contains all significant clusters after running 3dClustSim. Each cluster has an intensity across all voxels, in order from largest to smaller clusters.
In order to report coordinates, I used 3dAllineate to transform clusters that were in Kirby space into MNI space. I realize now the transformation changes the values of the clusters, and I am not able to distinguish which voxels belong to each thresholded cluster. Is there a way to register or transform the cluster map into MNI space without changing the values of the clusters?
Thank you
-Cate