Howdy-

As noted here:
[afni.nimh.nih.gov]
PyQt4 at the moment is basically only needed to run uber_subject.py, which we don't really recommend using anyways (for setting up an FMRI pipeline, writing an afni_proc.py command is the way to go-- probably looking at one of the maaaany helpful help examples, if necessary, as a starting point). So, I think you are probably fine, as is.

One thing that you might want to do is copy+paste this into your terminal:

echo "" >> ~/.bash_profile
echo "source ~/.bashrc" >> ~/.bash_profile
echo "" >> ~/.bash_profile

That will address this comment:

* shell bash: consider sourcing (non-login) .bashrc from (login) .bash_profile

in any future terminals.

The first comment in the "please fix" is not really anything to fix, just a comment that we write most of our scripts in tcsh.

--pt