AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 21, 2020 07:55PM
Hi AFNI team,
I am wondering the possible reason for a missing field of AFNI version in the output of 3dinfo. For example, I have the output of 3dinfo from one subject like this:

----- HISTORY -----
[lzh@node24.cluster: Thu Sep 27 18:04:07 2018] {AFNI_18.0.09:linux_xorg7_64} 3dDespike -NEW -nomask -prefix r2_despike.nii.gz r1_original.nii.gz
[lzh@node24.cluster: Thu Sep 27 18:04:37 2018] {AFNI_18.0.09:linux_xorg7_64} 3dresample -orient LPI -prefix r3_reorient.nii.gz -inset r2_despike.nii.gz
[lzh@node24.cluster: Thu Sep 27 18:04:59 2018] 3dvolreg -prefix r4_volreg.nii.gz -base 16 -1Dfile ./motion_parameters.1D r3_reorient.nii.gz

See the AFNI version (AFNI_18.0.09:linux_xorg7_64) has been printed out for the first two steps of 3dDespike and 3dresample, but this version information is missing for the last step of 3dvolreg.


However, if I check the same file from a different subject, I got the following:

----- HISTORY -----
[lzh@node6.cluster: Mon Oct 1 09:36:46 2018] {AFNI_18.0.09:linux_xorg7_64} 3dDespike -NEW -nomask -prefix r2_despike.nii.gz r1_original.nii.gz
[lzh@node6.cluster: Mon Oct 1 09:37:04 2018] {AFNI_18.0.09:linux_xorg7_64} 3dresample -orient LPI -prefix r3_reorient.nii.gz -inset r2_despike.nii.gz
[lzh@node6.cluster: Mon Oct 1 09:37:17 2018] {AFNI_18.0.09:linux_xorg7_64} 3dvolreg -prefix r4_volreg.nii.gz -base 63 -1Dfile ./motion_parameters.1D r3_reorient.nii.gz

See the version information are shown for all of the three steps performed in this subject.

I noticed this issue when trying to repeat the "3dvolreg" in the first subject shown above. In that subject, the head motion file (motion_parameters.1D) generated on "Thu Sep 27 18:04:59 2018" is different than what I can currently get with exactly the same command line and input file. I am attaching plots of one movement dimension generated back then in 2018 (the black line) and generated currently (the red line). The two curves look like each other but are not identical. This issue does not exist in the second subject whose 3dinfo shows complete AFNI version. In the second subject, the head motion estimates are identical between now and then.



Edited 1 time(s). Last edit at 01/21/2020 07:58PM by Zhihao_Li.
Attachments:
open | download - headmotion.jpg (178.4 KB)
Subject Author Posted

AFNI version missing in 3dinfo Attachments

Zhihao_Li January 21, 2020 07:55PM

Re: AFNI version missing in 3dinfo

ptaylor January 21, 2020 10:55PM

Re: AFNI version missing in 3dinfo

Zhihao_Li January 21, 2020 11:16PM

Re: AFNI version missing in 3dinfo

rick reynolds January 22, 2020 01:31PM

Re: AFNI version missing in 3dinfo

Zhihao_Li January 22, 2020 02:04PM

Re: AFNI version missing in 3dinfo

rick reynolds January 22, 2020 03:36PM

Re: AFNI version missing in 3dinfo

ptaylor January 22, 2020 03:44PM

Re: AFNI version missing in 3dinfo

Zhihao_Li January 22, 2020 04:55PM

Re: AFNI version missing in 3dinfo

ptaylor January 22, 2020 05:29PM