AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 22, 2020 05:00PM
AFNI program is crashing when I toggle from Original to Talairach View.

I loaded an anatomical dataset that was preprocessed using align_epi_anat.py and @auto_tlrc (commands below). The three views load in original view and the brain looks normal. When I click Talairach View, the program crashes. The terminal output for the crash is pasted below the AFNI commands. If I load only the target dataset using: afni 1000p.T1_ns+tlrc , then the TLRC dataset loads just fine. So it appears to be an issue with toggling between the two views.

Any ideas?




align_epi_anat.py -anat2epi -anat $subj.$anat+orig \
-epi $subj.$run1.tshift+orig -epi_base 2 \
-save_skullstrip -suffix _al_junk \
-epi_strip 3dAutomask \
-volreg off -tshift off

@auto_tlrc -base TT_N27+tlrc -input $subj.${anat}_ns+orig -no_ss


Fatal Signal 11 (SIGSEGV) received
AFNI_autorange_label
AFNI_reset_func_range
AFNI_setup_viewing
AFNI_initialize_view
AFNI_switchview_CB
new_MCW_bbox_cbwrap
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_19.3.12 Compile date = Nov 8 2019
** [[Precompiled binary macos_10.12_local: Nov 8 2019]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/cnalab/.afni.crashlog
Subject Author Posted

AFNI crashes on switch to TLRC view

michaelamlung January 22, 2020 05:00PM

Re: AFNI crashes on switch to TLRC view

rick reynolds January 22, 2020 06:40PM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 23, 2020 11:28AM

Re: AFNI crashes on switch to TLRC view

rick reynolds January 27, 2020 10:59AM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 27, 2020 01:28PM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 30, 2020 03:08PM

Re: AFNI crashes on switch to TLRC view

rick reynolds January 30, 2020 08:44PM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 31, 2020 02:38PM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 31, 2020 02:40PM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 31, 2020 03:58PM

Re: AFNI crashes on switch to TLRC view

michaelamlung February 01, 2020 08:16AM

Re: AFNI crashes on switch to TLRC view

michaelamlung February 01, 2020 08:37AM

Re: AFNI crashes on switch to TLRC view

michaelamlung February 01, 2020 09:36AM

Re: AFNI crashes on switch to TLRC view

rick reynolds February 01, 2020 09:59AM