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January 22, 2020 05:00PM
AFNI program is crashing when I toggle from Original to Talairach View.

I loaded an anatomical dataset that was preprocessed using align_epi_anat.py and @auto_tlrc (commands below). The three views load in original view and the brain looks normal. When I click Talairach View, the program crashes. The terminal output for the crash is pasted below the AFNI commands. If I load only the target dataset using: afni 1000p.T1_ns+tlrc , then the TLRC dataset loads just fine. So it appears to be an issue with toggling between the two views.

Any ideas?




align_epi_anat.py -anat2epi -anat $subj.$anat+orig \
-epi $subj.$run1.tshift+orig -epi_base 2 \
-save_skullstrip -suffix _al_junk \
-epi_strip 3dAutomask \
-volreg off -tshift off

@auto_tlrc -base TT_N27+tlrc -input $subj.${anat}_ns+orig -no_ss


Fatal Signal 11 (SIGSEGV) received
AFNI_autorange_label
AFNI_reset_func_range
AFNI_setup_viewing
AFNI_initialize_view
AFNI_switchview_CB
new_MCW_bbox_cbwrap
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_19.3.12 Compile date = Nov 8 2019
** [[Precompiled binary macos_10.12_local: Nov 8 2019]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/cnalab/.afni.crashlog
Subject Author Posted

AFNI crashes on switch to TLRC view

michaelamlung January 22, 2020 05:00PM

Re: AFNI crashes on switch to TLRC view

rick reynolds January 22, 2020 06:40PM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 23, 2020 11:28AM

Re: AFNI crashes on switch to TLRC view

rick reynolds January 27, 2020 10:59AM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 27, 2020 01:28PM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 30, 2020 03:08PM

Re: AFNI crashes on switch to TLRC view

rick reynolds January 30, 2020 08:44PM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 31, 2020 02:38PM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 31, 2020 02:40PM

Re: AFNI crashes on switch to TLRC view

michaelamlung January 31, 2020 03:58PM

Re: AFNI crashes on switch to TLRC view

michaelamlung February 01, 2020 08:16AM

Re: AFNI crashes on switch to TLRC view

michaelamlung February 01, 2020 08:37AM

Re: AFNI crashes on switch to TLRC view

michaelamlung February 01, 2020 09:36AM

Re: AFNI crashes on switch to TLRC view

rick reynolds February 01, 2020 09:59AM