AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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krisknut
February 07, 2020 10:13AM
When I open a terminal window and type "afni", I get the following error. Note that I've put echo statements in my .bash_profile and .bashrc to verify they are being called and setting DYLD_LIBRARY_PATH correctly (I did this in response to the error, so know they are not causing the error):

Last login: Fri Feb 7 10:03:51 on ttys001
Running .bash_profile
RUNNING ~/.bashrc
-------- freesurfer-fsl-matlab-Darwin-OSX-stable-pub-v6.0.0-tutorial-2beb96c --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer
FSFAST_HOME /Applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/subjects
MNI_DIR /Applications/freesurfer/mni
*****************************************
DYLD_LIBRARY_PATH is /opt/X11/lib/flat_namespace
*****************************************
~: afni
Precompiled binary macos_10.12_local: Jan 29 2020 (Version AFNI_20.0.04 'Galba')

Thanks go to P Molfese for useful feedback

Initializing: X11[The X.Org Foundation v 11804000].. Widgets.
Fatal Signal 11 (SIGSEGV) received
Last STATUS: making imag->rowcol
AFNI_make_wid1
AFNI_make_widgets
new_AFNI_controller
MAIN_workprocess
AFNI:main
Bottom of Debug Stack
** AFNI version = AFNI_20.0.04 Compile date = Jan 29 2020
** [[Precompiled binary macos_10.12_local: Jan 29 2020]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/knutsonk/.afni.crashlog
++ AFNI is detached from terminal.
~:

If I type "source ~/.bashrc", afni works fine, but .bashrc was just run when the terminal window was open, so it's unclear what is happening.
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Error when starting afni with new terminal window Attachments

krisknut February 07, 2020 10:13AM

Re: Error when starting afni with new terminal window

rick reynolds February 07, 2020 11:59AM