AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 20, 2020 03:42PM
Yes, that SA[0] GLT should be identical to the first parameter results the come by default. That was just to verify that the GLTs are not doing anything special.

To get a comparison that is more like the F-test for the SA terms, then 'SYM: SA[0] \ SA[1]' might be reasonable. That is a 2-line contrast for those two parameters (\ is used as a line separator), testing more whether either one is significant. But again, you probably already have an F-stat that corresponds with original term (or maybe not, since there does not seem to be any -fout in the 3dDeconvolve command).

Note that something like an F-test might not help so much here, assuming you will use single subject betas for a group analysis. Maybe it would be good to consider the 2-line contrast applied at the group level, instead.

- rick
Subject Author Posted

difference between 3dDeconvolve results for individual regressor vs. GLT with 1 term

lissariley February 20, 2020 12:59PM

Re: difference between 3dDeconvolve results for individual regressor vs. GLT with 1 term

rick reynolds February 20, 2020 01:30PM

Re: difference between 3dDeconvolve results for individual regressor vs. GLT with 1 term

lissariley February 20, 2020 01:48PM

Re: difference between 3dDeconvolve results for individual regressor vs. GLT with 1 term

rick reynolds February 20, 2020 03:42PM

Re: difference between 3dDeconvolve results for individual regressor vs. GLT with 1 term

lissariley March 12, 2020 02:21PM