Dear AFNI experts:
I’m trying to convert FreeSurfer surfaces to afni, however there are something wrongs in this process. I tried to download a new FreeSurfer license but I still encountered the same problem.
The code I used in Freesurfer as follow:
export FREESURFER_HOME=~/Downloads/freesurfer
source $FREESURFER_HOME/SetUpFreeSurfer.sh
export path_p_ss=~/Downloads/T1/sub-001
export ss_id=$path_p_ss:t
recon-all \
-all \
-sd $path_p_ss\
-subjid sub-001 \
-i $path_p_ss/sub-001.nii
It said nothing wrong when running this program.
And the code I used to convert FreeSurfer surfaces to afni is that:
@SUMA_Make_Spec_FS \
-NIFTI \
-fspath $path_p_ss/sub-001 \
-sid $ss_id
Here is the error in this program:
writing to /home/p1/Downloads/T1/sub-001/sub-001/./SUMA/wm.seg.nii...
-- running 'mris_convert lh.smoothwm lh.smoothwm.asc'
Saving lh.smoothwm.asc as a surface
Error ConvertSurface: volume /home/p1/Downloads/T1/sub-001/sub-001/./SUMA//home/p1/Downloads/T1/sub-001:t_SurfVol.nii not found.
failure: could not create surface lh.smoothwm.gii
--> is your FreeSurfer license installed?
program failure: exiting...
