AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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khalifas
March 06, 2020 01:17PM
Hello,

I am new to using AFNI and have a question regarding using the skull strip feature. I have successfully used 3dSkullStrip to remove the skull of my anatomical imaging, but I also phase images from a susceptibility weighted sequence. I tried performing the skull stripping on the phase imaged directly, but the results were poor. I noticed that there is a way to produce a mask using 3dSkullStrip, so I wanted to create the mask from my anatomical image and apply it to my phase image. However, I do not know how to apply the mask once I have it. Is there a separate function that would allow me to do this?

Thank you.
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Subject Author Posted

3dSkullStrip on phase images using a mask

khalifas March 06, 2020 01:17PM

Re: 3dSkullStrip on phase images using a mask

Cesar Caballero Gaudes March 06, 2020 02:33PM