AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 12, 2020 07:35PM
Thank you very much Paul, your code does work for me!
I have 3 more questions:
(1) What's the orientation code (LPI, RAI?) in your "sphere_coords.1D" file? I am trying to display my ROI balls against the background of MNI_N27 surface so coded my coordinates in LPI orientation, but they are far off the intended locations in the display.
(2) How does this "Nidos" way differ from the "isosurfaces" way on showing ROIs in suma? Why does the "isosurfaces" way not work in this case?
(3) What if one wants to show spheres and activation blobs (irregular shape in a volume dataset) together and against a background of surface? Now it seems to me that "suma -niml" with "Nidos" can work for spheres and "suma -vol" can work for blobs (but with the issue of color homogeneity). How would you approach it? Is there an example page for that?
Subject Author Posted

show spherical ROIs on a surface background Attachments

Zhihao_Li March 12, 2020 09:56AM

Re: show spherical ROIs on a surface background

ptaylor March 12, 2020 10:19AM

Re: show spherical ROIs on a surface background

Zhihao_Li March 12, 2020 10:47AM

Re: show spherical ROIs on a surface background Attachments

ptaylor March 12, 2020 11:36AM

Re: show spherical ROIs on a surface background

Zhihao_Li March 12, 2020 07:35PM

Re: show spherical ROIs on a surface background Attachments

ptaylor March 13, 2020 05:19PM

Re: show spherical ROIs on a surface background

Daniel Glen March 19, 2020 03:19PM