AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
March 19, 2020 11:53AM
Hi, Neha-

The main tool for building an FMRI pipeline (task, rest or other) is afni_proc.py; in the help file for that program
[afni.nimh.nih.gov]
... there are several useful examples:
[afni.nimh.nih.gov]
... and depending on what specifically you want to do, you might want to look at Ex. 11/11b for resting state, and something like #6/6b for task (though, there are soooo many varieties of task designs...).

Here is also a link to some of the Bootcamp recordings of us teaching:
[afni.nimh.nih.gov]
This might be helpful for you to look at to learn more about AFNI programs (starting from the GUI, through basic analysis, to group analysis, alignment and visualization capabilities), and specifically using afni_proc.py (videos #11-15).

--pt
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Subject Author Posted

Putting individual subjects in MNI space in the proc_py script

neha_sinha132 March 19, 2020 11:17AM

Re: Putting individual subjects in MNI space in the proc_py script

ptaylor March 19, 2020 11:53AM

Re: Putting individual subjects in MNI space in the proc_py script

neha_sinha132 March 19, 2020 07:39PM

Re: Putting individual subjects in MNI space in the proc_py script

ptaylor March 20, 2020 09:37AM