Hi afni experts,
using the align_epi_anat command as shown below, my question is the found transformations (Slice timing, motion correction, reg EPI to ANAT, reg EPI to MNI) are applied one at a time or all together?
Tanhks
align_epi_anat.py \
-anat ANAT.nii.gz \
-epi EPI_r01.nii.gz \
-child_epi EPI_r??.nii.gz \
-epi_base 0 \
-tshift_opts -tpattern @slice_time.1D \
-epi2anat \
-giant_move \
-tlrc_apar ANAT_MNI.nii.gz