afni.nimh.nih.gov

Hi Paul,

I edited the afni_proc.py scripts according to your suggestions but my alignment from QC html looks different from your attachment.

The script:
afni_proc.py \
-subj_id {$subj} \
-script proc.{$subj}.vwfa \
-out_dir {$subj}.VWFA.results \
-dsets {$subj}_vwfa_1+orig {$subj}_vwfa_2+orig \
-copy_anat {$subj}_2_t1+orig \
-anat_has_skull yes \
-blocks despike tshift align volreg blur mask scale regress \
-tcat_remove_first_trs 5 \
-tshift_interp -Fourier \
-volreg_align_to MIN_OUTLIER \
-align_opts_aea \
-cmass cmass \
-volreg_align_e2a \
-regress_stim_times word.txt checkerboard.txt \
-regress_local_times \
-regress_stim_labels word checkerboard \
-regress_basis 'BLOCK(24,1)' \
-regress_censor_motion 0.3 \
-regress_censor_outliers 0.1 \
-regress_opts_3dD \
-jobs 4 \
-gltsym 'SYM: +word -checkerboard' \
-glt_label 1 word_vs_checkerboard \
-regress_run_clustsim no \
-regress_est_blur_errts \
-regress_est_blur_epits \
-html_review_style pythonic