Hi there.
I'd like to confirm that a warning message in my output.proc file is ok to ignore.
It is in the outcount autoblock at the very beginning of pre-processing. The warning states that the input dataset is not 3d+time, and it will therefore assume the TR = 1.0. Since the input file is the 1D outcount file, I am assuming this is just a stock warning for situations in which input files are not 3d+time?
I'd just like to confirm that the script will not go on to assume that the TR =1.0 for the functional runs, correct?
Error shown below, and thank you in advance for the clarification!!
set minindex = `3dTstat -argmin -prefix - outcount_rall.1D\'
3dTstat -argmin -prefix - outcount_rall.1D'
++ 3dTstat: AFNI version=AFNI_19.2.26 (Sep 24 2019) [64-bit]
++ Authored by: KR Hammett & RW Cox
[7m*+ WARNING:[0m Input dataset is not 3D+time; assuming TR=1.0
set ovals = ( `1d_tool.py -set_run_lengths $tr_counts
-index_to_run_tr $minindex` )
1d_tool.py -set_run_lengths 108 108 -index_to_run_tr 127
set minoutrun = 02
set minouttr = 19
echo min outlier: run 02, TR 19
tee out.min_outlier.txt
min outlier: run 02, TR 19
foreach run ( 01 02 )
