AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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joy0617
April 08, 2020 06:06PM
Hi Paul,

Sorry! I missed one part of the error message. The following proceeds what I have posted last time:

+++ Command Echo:
3dQwarp -lite -base /Users/bl/abin/MNI152_2009_template_SSW.nii.gz[0] -source ./junk.SSwarper.5XAHIpy2lsU_AffSS.nii -iniwarp ./junk.SSwarper.5XAHIpy2lsU_TAL5_AWARP.nii -warpscale 1 -lpa -inilev 1 -maxlev 5 -wtgaus 4.5 -inedge -pblur -workhard:5:5 -nodset -prefix ./junk.SSwarper.5XAHIpy2lsU_QQ5.nii

++ 3dQwarp: AFNI version=AFNI_20.0.23 (Mar 27 2020) [64-bit]
++ Authored by: Zhark the (Hermite) Cubically Warped
++ Dataset zero-pad: xbot=15 xtop=14 ybot=13 ytop=22 zbot=15 ztop=9 voxels
++ Weightizing the base image: FWHM = 4.5 (vox)
++ +++++++++++ Begin warp optimization: base=/Users/bl/abin/MNI152_2009_template_SSW.nii.gz source=./junk.SSwarper.5XAHIpy2lsU_AffSS.nii

Fatal Signal 11 (SIGSEGV) received
IW3D_setup_for_improvement
IW3D_warpomatic
IW3D_warp_s2bim
3dQwarp
Bottom of Debug Stack
** AFNI version = AFNI_20.0.23 Compile date = Mar 27 2020
** [[Precompiled binary macos_10.12_local: Mar 27 2020]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/bl/.afni.crashlog
++ SSW Step 6 ... piece 2
++ OpenMP thread count = 4
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Subject Author Posted

@SSwarper error: ** ERROR: Can't open warp dataset './junk.SSwarper.5XAHIpy2lsU_QQ5_WARP.nii'

joy0617 April 08, 2020 03:52PM

Re: @SSwarper error: ** ERROR: Can't open warp dataset './junk.SSwarper.5XAHIpy2lsU_QQ5_WARP.nii'

ptaylor April 08, 2020 05:39PM

Re: @SSwarper error: ** ERROR: Can't open warp dataset './junk.SSwarper.5XAHIpy2lsU_QQ5_WARP.nii'

joy0617 April 08, 2020 06:06PM

Re: @SSwarper error: ** ERROR: Can't open warp dataset './junk.SSwarper.5XAHIpy2lsU_QQ5_WARP.nii'

joy0617 April 10, 2020 12:38PM

Re: @SSwarper error: ** ERROR: Can't open warp dataset './junk.SSwarper.5XAHIpy2lsU_QQ5_WARP.nii'

ptaylor April 10, 2020 12:42PM

Re: @SSwarper error: ** ERROR: Can't open warp dataset './junk.SSwarper.5XAHIpy2lsU_QQ5_WARP.nii'

krisknut May 18, 2020 10:36AM