AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 17, 2020 10:25AM
Hi-

Re. colorbar and overlay:
Let's say the max colorbar max value is set to "A" (and A>0): this could be the max value in the dset, the 95% percentile in the dset, or any number of your choosing (you unselect the 'default' one and type it yourself). Then, the possible values of the *bottom* of the colorbar are either "-A" ("Pos?" box is unchecked) or 0 ("Pos?" box is checked).

To have a lower bound that is not -A or 0, you can, indeed, use 3dcalc to offset things, and have an effectively arbitrary lower bound.

For the *underlay* (possibly a sidenote):
You can set the gray/white (or other) colorbar to go from [B, C], where the lowerbound B is *not* constrained to be 0 or -C. To set that, right click on the vertical grayscale cbar in the image panel, select the upper "Choose Display Range", and put in 2 numbers; note, it will only change it for that image panel.

--pt
Subject Author Posted

Changing lower bound of intensity bar values

bb2958 April 16, 2020 05:03PM

Re: Changing lower bound of intensity bar values

bb2958 April 16, 2020 05:26PM

Re: Changing lower bound of intensity bar values

ptaylor April 17, 2020 10:25AM

Re: Changing lower bound of intensity bar values

Daniel Glen April 17, 2020 11:08AM