AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
krisknut
May 15, 2020 05:09PM
While running @SSwarper, I get a Fatal Error after the following:
++ 3dAllineate: total CPU time = 2446.8 sec Elapsed = 1214.6
++ ###########################################################
++ # Please check results visually for alignment quality #
++ ###########################################################
++ # '-autoweight' is recommended when using -lpc or -lpa #
++ # If your results are not good, please try again. #
++ ###########################################################


++ 3dQwarp: replacing source dataset with 3dAllineate result ./junk.SSwarper.uLTKeexMbm7_TAL5_Allin.nii
# mat44 3dAllineate matrix:
0.959131 -0.007311 -0.014240 14.463300
-0.009673 0.925549 0.229081 5.692670
-0.007767 -0.218347 0.829814 33.946301
++ Dataset zero-pad: xbot=15 xtop=14 ybot=13 ytop=22 zbot=15 ztop=9 voxels
++ +++++++++++ Begin warp optimization: base=/Users/knutsonk/abin/MNI152_2009_template_SSW.nii.gz source=./junk.SSwarper.uLTKeexMbm7_TAL5_Allin.nii

Fatal Signal 11 (SIGSEGV) received
IW3D_setup_for_improvement
IW3D_warpomatic
IW3D_warp_s2bim
3dQwarp
Bottom of Debug Stack
** AFNI version = AFNI_20.1.06 Compile date = May 4 2020
** [[Precompiled binary macos_10.12_local: May 4 2020]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Crash log is appended to file /Users/knutsonk/.afni.crashlog
++ SSW Step 4
++ no -frac option: defaulting to -union
++ processing 1 input datasets...
++ padding all datasets by 2 (for dilations)
++ frac 0 over 1 volumes gives min count 0
++ voxel limits: 0 clipped, 2117569 survived, 6412452 were zero
++ writing result junk.SSwarper.uLTKeexMbm7_MASK.nii...
++ Output dataset ./junk.SSwarper.uLTKeexMbm7_MASK.nii
++ 3dcalc: AFNI version=AFNI_20.1.06 (May 4 2020) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can't open dataset ./junk.SSwarper.uLTKeexMbm7_TAL5.nii
** Program compile date = May 4 2020
Reply Quote
RSS
Subject Author Posted

3dQwarp Fatal Signal 11 received while running @SSwarper

krisknut May 15, 2020 05:09PM

Re: 3dQwarp Fatal Signal 11 received while running @SSwarper

krisknut May 16, 2020 05:28AM

Re: 3dQwarp Fatal Signal 11 received while running @SSwarper

krisknut May 22, 2020 09:03AM

Re: 3dQwarp Fatal Signal 11 received while running @SSwarper

kxd344 June 29, 2020 01:01PM

Re: 3dQwarp Fatal Signal 11 received while running @SSwarper

krisknut June 29, 2020 03:12PM

Re: 3dQwarp Fatal Signal 11 received while running @SSwarper

kxd344 June 29, 2020 10:13PM