AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
June 09, 2020 03:48PM
Hi, Amy-

What is the output of:
echo $0
?

I am going to guess it is "zsh", which for some reason is the default shell on Macs as of OS 15.*... We typically setup for either "bash" or "tcsh" shells.

If you don't have a strong preference of background shell, the simplest thing to do would probably be to change your default shell in terminals to one of the more common ones (bash or tcsh). To do so, open "System Preferences", click on "Users & Groups", click on the closed lock in the lower left of the panel (if the lock is open already, you don't need to click on it) and enter your admin/root password to unlock it, then right-click on your username in the menu in the pale that is your "current user" and select "Advanced Options...." (which should be the *only* option there). Theeeeen, in the menu of options there, go to the "Login shell" one, and change what is currently there (probably "/bin/zsh") to either "/bin/bash" or "/bin/tcsh"; your choice here doesn't matter so much-- I use "/bin/bash", other people in the group use "/bin/tcsh", and the AFNI setup instructions cover both scenarios.

After doing that, you will likely have to log out and log back in for those changes to take effect. When you open a terminal now and type "echo $0", you should see something with either "bash" or "tcsh" (depending on what you picked for your new login shell), possibly with a minus sign (fine if you do/don't see that).

Then you should be able to run
suma -update_env
and all the other fun AFNI programs; first thing to try might be to see how happy the system check is:
afni_system_check.py -check_all
and make sure everything is set well.

--pt
Subject Author Posted

Problem Installing AFNI on Catalina (MacOS 10.15)

amyhegar June 09, 2020 01:27PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

ptaylor June 09, 2020 03:48PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

amyhegar June 10, 2020 03:01PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

ptaylor June 10, 2020 03:35PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

amyhegar June 10, 2020 04:37PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

ptaylor June 10, 2020 04:44PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

amyhegar June 11, 2020 12:39PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

ptaylor June 11, 2020 01:35PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

amyhegar June 11, 2020 02:11PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

ptaylor June 11, 2020 02:44PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

amyhegar June 11, 2020 02:56PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

ptaylor June 11, 2020 03:13PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

amyhegar June 11, 2020 03:58PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

ptaylor June 11, 2020 04:46PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

amyhegar June 11, 2020 05:38PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

gang June 12, 2020 02:56PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

amyhegar June 14, 2020 02:13PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

Ziad Saad June 19, 2020 07:43PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

gang June 19, 2020 08:00PM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

rick reynolds June 21, 2020 10:34AM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

Peter Molfese June 22, 2020 09:50AM

Re: Problem Installing AFNI on Catalina (MacOS 10.15)

Ziad Saad June 22, 2020 10:33AM