Hi folks,

So I'm collaborating with some folks from Bulgaria who are sending me their fMRI scans. Not the sharpest T1s, but good enough at least for manual landmarking for co-localization. however, when I try to do my usual manual alignment and co-registration (to nudge the structural to match the task time series image in space), the structural data suddenly become horribly mis-aligned and truncated. See pics of native structural as underlay, then again as overlay. What happened and what could be done about this?

Thanks

-Jim

P.S. I can upload the two respective files if someone can steer me to the upload URL