AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 15, 2020 01:35AM
Hi Gang,

Thanks for your reply.
I just updated AFNI and it seems to work. However, it prompts with the following warning (after ****) after Slice 15.
Any suggestion?

Thanks in advance.
Phoebe.

*****
Loading required package: lme4
Loading required package: Matrix

Range of input data: [-0.053, 1.651]

If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or something else
is likely inappropriate.

[1] "Great, test run passed at voxel (85, 130, 81)!"
[1] "Start to compute 151 slices along Z axis. You can monitor the progress"
[1] "and estimate the total run time as shown below."
[1] "07/14/20 19:24:08.224"
Z slice # 1 done: 07/14/20 19:24:08.676
Z slice # 2 done: 07/14/20 19:24:08.911
Z slice # 3 done: 07/14/20 19:24:09.137
Z slice # 4 done: 07/14/20 19:24:09.364
Z slice # 5 done: 07/14/20 19:24:09.595
Z slice # 6 done: 07/14/20 19:24:09.834
Z slice # 7 done: 07/14/20 19:24:10.063
Z slice # 8 done: 07/14/20 19:24:10.303
Z slice # 9 done: 07/14/20 19:24:10.532
Z slice # 10 done: 07/14/20 19:24:11.298
Z slice # 11 done: 07/14/20 19:24:12.572
boundary (singular) fit: see ?isSingular
Z slice # 12 done: 07/14/20 19:24:14.297
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
Z slice # 13 done: 07/14/20 19:24:16.326
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
Z slice # 14 done: 07/14/20 19:24:19.159
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
boundary (singular) fit: see ?isSingular
Z slice # 15 done: 07/14/20 19:24:23.239
boundary (singular) fit: see ?isSingular
Subject Author Posted

3dICC error

pstchan July 04, 2020 07:45PM

Re: 3dICC error

gang July 07, 2020 10:54AM

Re: 3dICC error

pstchan July 15, 2020 01:35AM

Re: 3dICC error

gang July 15, 2020 09:21AM

Re: 3dICC error

pstchan July 15, 2020 04:02PM