AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
July 31, 2020 10:16AM
Hi Gang,

I tried to save the script to txt and execute it in terminal. But still got the same error:

** Error:
Illegal parameters on command line:
c("-prefix 3dMVM_test -jobs 1", "-bsVars  A*B", "-mask wbrainmask_th05.nii", "-SS_type 3", "-num_glt 2", "-gltLabel 1 a1_b1_vs_b2 -gltCode 1 A : 1*a1 B : 1*b1-1*b2", "-gltLabel 2 a2_b1_vs_b2 -gltCode 2", "A : 1*a2 B : 1*b1-1*b2", "-dataTable @table_test.txt")
Try -allowed_options, or -help for details


Again, the script I'm using is:
3dMVM -prefix 3dMVM_test -jobs 1 -bsVars  'A*B' -mask mask.nii -SS_type 3 -num_glt 2 -gltLabel 1 a1_b1_vs_b2 -gltCode 1 'A : 1*a1 B : 1*b1-1*b2' -gltLabel 2 a2_b1_vs_b2 -gltCode 2 'A : 1*a2 B : 1*b1-1*b2' -dataTable @table_test.txt

The table_test.txt is:
Subj A B InputFile
s1 a1 b1 s1_rest_z.nii
s2 a1 b1 s2_rest_z.nii
s3 a1 b1 s3_rest_z.nii
s4 a1 b1 s4_rest_z.nii
s5 a2 b2 s5_rest_z.nii
s6 a2 b2 s6_rest_z.nii
s7 a2 b2 s7_rest_z.nii
s8 a2 b2 s8_rest_z.nii
s9 a1 b2 s9_rest_z.nii
s10 a1 b2 s10_rest_z.nii
s11 a1 b2 s11_rest_z.nii
s12 a1 b2 s12_rest_z.nii
s13 a2 b1 s13_rest_z.nii
s14 a2 b1 s14_rest_z.nii
s15 a2 b1 s15_rest_z.nii
s16 a2 b1 s16_rest_z.nii
Subject Author Posted

Group comparisons after 3dRegAna

sytang317 July 27, 2020 03:54PM

Re: Group comparisons after 3dRegAna

gang July 28, 2020 12:15PM

Re: Group comparisons after 3dRegAna

sytang317 July 29, 2020 12:04PM

Re: Group comparisons after 3dRegAna

gang July 29, 2020 04:34PM

Re: Group comparisons after 3dRegAna

sytang317 July 29, 2020 05:06PM

Re: Group comparisons after 3dRegAna

gang July 30, 2020 10:53AM

Re: Group comparisons after 3dRegAna

sytang317 July 30, 2020 01:56PM

Re: Group comparisons after 3dRegAna

sytang317 July 30, 2020 02:03PM

Re: Group comparisons after 3dRegAna

gang July 30, 2020 06:12PM

Re: Group comparisons after 3dRegAna

sytang317 July 31, 2020 10:16AM

Re: Group comparisons after 3dRegAna

gang July 31, 2020 11:31AM

Re: Group comparisons after 3dRegAna

sytang317 August 04, 2020 04:24PM

Re: Group comparisons after 3dRegAna

sytang317 August 12, 2020 02:51PM

Re: Group comparisons after 3dRegAna

gang August 13, 2020 02:43PM

Re: Group comparisons after 3dRegAna

sytang317 August 13, 2020 03:01PM

Re: Group comparisons after 3dRegAna

gang August 14, 2020 08:48AM

Re: Group comparisons after 3dRegAna

sytang317 August 17, 2020 02:26PM