Hi AFNI!
I am running afni_proc but I am having an issue aligning my EPI to my T1. My datasets are very close that's why I change the option -giant_move for big move and the results are better but still not good. I also tried with LPC+ZZ and is not different than the picture attached. Any suggestions? Here is my command
afni_proc.py \
-subj_id 198_061814 \
-copy_anat /rcc/stor1/projects/GerDep/Luisa/Grief_V1/afni_proc/198_061814/anat/anatSS.ssWarp.nii \
-anat_has_skull no \
-dsets /rcc/stor1/projects/GerDep/Luisa/Grief_V1/afni_proc/198_061814/func/EPI_retroicor_fixed.nii \
-blocks tshift align tlrc volreg blur mask scale regress \
-radial_correlate_blocks tcat volreg \
-tcat_remove_first_trs 5 \
-align_opts_aea -cost lpc -big_move -check_flip \
-tlrc_base /rcc/stor1/projects/GerDep/Luisa/Grief_V1/afni_proc/MNI152_2009_template_SSW.nii.gz \
-tlrc_NL_warp \
-tlrc_NL_warped_dsets /rcc/stor1/projects/GerDep/Luisa/Grief_V1/afni_proc/198_061814/anat/anatQQ.ssWarp.nii \
/rcc/stor1/projects/GerDep/Luisa/Grief_V1/afni_proc/198_061814/anat/anatQQ.ssWarp.aff12.1D \
/rcc/stor1/projects/GerDep/Luisa/Grief_V1/afni_proc/198_061814/anat/anatQQ.ssWarp_WARP.nii \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-volreg_tlrc_warp \
-mask_epi_anat yes \
-blur_size 4.0 \
-regress_stim_times \
/rcc/stor1/projects/GerDep/Luisa/Grief_V1/afni_proc/198_061814/func/newTask_1_Face_IdealHRF.1D \
/rcc/stor1/projects/GerDep/Luisa/Grief_V1/afni_proc/198_061814/func/newTask_Shape_IdealHRF.1D \
-regress_stim_labels Face Shape
-regress_opts_3dD -jobs 2 -gltsym 'SYM: Face -Shape' \
-glt_label 1 F-S \
-regress_motion_per_run \
-regress_censor_motion 0.3 \
-regress_censor_outliers 0.05 \
-regress_3dD_stop \
-regress_reml_exec \
-regress_compute_fitts \
-regress_make_ideal_sum sum_ideal.1D \
-regress_est_blur_epits \
-regress_est_blur_errts \
-regress_run_clustsim no \
-html_review_style pythonic \
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