Dear Colleagues,
Hi. I hope everyone is doing well. I'm sure I'm missing something simple, but after reading the relevant sections of the afni_proc.py help information and several tests, any help would be appreciated. After copying
anat.nii
/misc/prog/afni/current.x86_64/TT_N27+tlrc*
and the other necessary files to the working directory, this works.
@auto_tlrc \
-dx 2.5 \
-dy 2.5 \
-dz 2.4 \
-suffix _tl \
-base TT_N27+tlrc \
-input anat.nii
However, this gives me "Error: Template TT_N27+tlrc could not be located."
afni_proc.py \
-blocks align tlrc volreg \
-tcat_remove_first_trs 0 \
-align_opts_aea \
-Allineate_opts \
-warp shift_rotate \
-newgrid 2.0 \
-epi_base 0 \
-epi2anat \
-giant_move \
-anat_has_skull yes \
-tlrc_base TT_N27+tlrc \
-tlrc_suffix _tl \
-tlrc_opts_at \
-dx 2.5 \
-dy 2.5 \
-dz 2.4 \
-volreg_align_to first \
-volreg_opts_vr \
-float \
-1Dfile 20170223_0434_motion.1D \
-maxdisp1D 20170223_0434_motion_maxdisp.1D \
-dsets \
../original_files/20170223_0434.nii \
-copy_anat ../original_files/anat.nii \
-out_dir ./$subj.results \
-subj_id $subj \
-script proc.$subj \
-scr_overwrite \
-verb 1 \
-execute
This information might also help.
(base) picchionid@raid ~> afni -ver
Precompiled binary linux_openmp_64: Aug 28 2020 (Version AFNI_20.2.15 'Aulus Vitellius')
(base) picchionid@raid ~> which afni
/misc/prog/bin/afni
Sincerely,
Dante
