AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
JW
September 07, 2020 04:55PM
Dear AFNI experts,

Hope everyone is staying safe and healthy. I am trying to use the basal forebrain mask in the SPM Anatomy Toolbox mask as a seed mask for the resting state analysis in AFNI. I downloaded the mask from the SPM webpage and converted the SPM mask to the standard MNI using @ShiftVolume -MNI_Anat_to_MNI.
I tried this earlier which showed a mask in the first attached screenshot. I was trying to redo it today and it shows a completely different mask (the second screenshot). Could you please let me know why this happened? I think the first one should be correct since the basal forebrain is a very small region. Thank you in advance for your help.

Best,
JW



Edited 3 time(s). Last edit at 09/07/2020 05:43PM by JW.
Reply Quote
Attachments:
open | download - NBM_mask_z=-16.jpg (300.6 KB)
open | download - 1.jpg (187 KB)
RSS
Subject Author Posted

SPM Toolbox Mask Conversion Attachments

JW September 07, 2020 04:55PM

Re: SPM Toolbox Mask Conversion

Daniel Glen September 16, 2020 08:27PM