AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 05, 2020 11:41AM
Hi Rick,

I think the two images could be interpreted as a video, so I'll have onset times for the first image and then a block function of 1 second. So, I have to generate stimuli files for each condition that I want to compare, correct? Basically, in one file (correct) having onsets of the first image when the subject makes a correct decision, and in another file (incorrect) the onsets of the first image when the subject is incorrect. Then, I can do the same for the other two "irrelevant" stimuli, namely confidence (split into low / high confidence) and trust (split into "subject makes a different decision" vs. "subject makes the same decision" after feedback). Does this make sense? See code below.

-regress_stim_files                                              \
            stim1_correct_stim_file.1D                      \
            stim1_incorrect_stim_file.1D                   \
            stim2_confident_stim_file.1D                  \
            stim2_nonconfident_stim_file.1D            \
            stim3_trust_stim_file.1D                          \
            stim3_distrust_stim_file.1D                     \
-regress_stim_labels                                           \
            correct incorrect                                      \
            confident nonconfident                            \
            trust distrust                                            \
-regress_basis_multi                                           \
            "BLOCK(1,1)"                                          \
            "BLOCK(1,1)"                                          \
            "BLOCK(2,1)"                                          \
            "BLOCK(2,1)"                                          \
            "BLOCK(2,1)"                                          \
            "BLOCK(2,1)"

Otherwise, if I put the onsets of all stimuli in one file, how do I specify the conditions I want to compare?

Thank you!
Davide
Subject Author Posted

Model-based fMRI for decision-making

Davide Valeriani September 14, 2020 11:34AM

Re: Model-based fMRI for decision-making

rick reynolds September 24, 2020 01:03PM

Re: Model-based fMRI for decision-making

Davide Valeriani September 24, 2020 03:32PM

Re: Model-based fMRI for decision-making

rick reynolds October 01, 2020 03:33PM

Re: Model-based fMRI for decision-making

Davide Valeriani October 05, 2020 11:41AM

Re: Model-based fMRI for decision-making

rick reynolds October 28, 2020 02:22PM

Re: Model-based fMRI for decision-making

Davide Valeriani November 09, 2020 06:43PM

Re: Model-based fMRI for decision-making

rick reynolds November 16, 2020 11:42AM

Re: Model-based fMRI for decision-making Attachments

Davide Valeriani November 17, 2020 09:39AM