Hi Gang,

It ran fine and output the results along with the FDR values. Sorry for the false alarm.


I have other questions regarding interpretating the contrasts. Here are the model and contrasts I used, there were 4 experimental groups and three time points, TP1, TP2, TP3

3dLMEr -prefix DTI_long \
-jobs 6 \
-mask /Users/pyeh/bin/longDTI_npoint/mask.nii \
-model 'Group*TimePoint+Gender+Age+Daysinceinj+(1|ID)' \
-qVars 'Age,Daysinceinj' \
-gltCode TP2-TP1controls-ComplicatedmTBI 'Group : 1*control -1*complicatedmTBI TimePoint : 1*TP2 -1*TP1' \
-glfCode Baseline_maineffect_Control 'Group : 1*control -1*complicatedmTBI & 1*control -1*uncomplicatedmTBI & 1*control -1*modsevere TimePoint : 1*TP1' \

For the "Group : 1*control -1*complicatedmTBI TimePoint : 1*TP2 -1*TP1", the z score means the control had larger slope (trajectory) than the complicatedmTBI group between TP2 and TP1?

,and "Group : 1*control -1*complicatedmTBI & 1*control -1*uncomplicatedmTBI & 1*control -1*modsevere TimePoint : 1*TP1'" was the F value of the TP1 main effect of the control group?

Thanks.

Ping