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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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pinghongyeh
November 03, 2020 11:41AM
Dear AFNI users,

I have used the "file_tool" to fix the 3dICC run script but still got the errors
Error in if (len%%wd != 0) errex.AFNI(paste("The content under -dataTable is not rectangular !", :
argument is of length zero

Here is my script

3dICC -prefix ICC \
-jobs 6 \
-mask /Users/pyeh/bin/longDTI_npoint/mask.nii \
-model '1+age+(1|TimePoint)+(1|Subj)' \
-dataTable \
Subj TimePoint Group Gender Age Daysinceinj inputFile \
1663 TP1 control Male 44.76986301 3294 /Users/pyeh/bin/longDTI_npoint/noninjcontrols/RD/all/NCNC1663_0001_RD_warped2MNI152_T1_1mm.nii \
1663 TP2 control Male 45.91232877 3711 /Users/pyeh/bin/longDTI_npoint/noninjcontrols/RD/all/NCNC1663_0002_RD_warped2MNI152_T1_1mm.nii \
3016 TP1 control Male 44.40821918 1177 /Users/pyeh/bin/longDTI_npoint/noninjcontrols/RD/all/NCNC3016_0001_RD_warped2MNI152_T1_1mm.nii \
3016 TP2 control Male 45.25753425 1487 /Users/pyeh/bin/longDTI_npoint/noninjcontrols/RD/all/NCNC3016_0002_RD_warped2MNI152_T1_1mm.nii \
3021 TP1 control Male 47.42739726 2961 /Users/pyeh/bin/longDTI_npoint/noninjcontrols/RD/all/NCNC3021_0001_RD_warped2MNI152_T1_1mm.nii \
3021 TP2 control Male 48.78082192 3455 /Users/pyeh/bin/longDTI_npoint/noninjcontrols/RD/all/NCNC3021_0002_RD_warped2MNI152_T1_1mm.nii \
3063 TP1 control Male 49.28219178 396 /Users/pyeh/bin/longDTI_npoint/noninjcontrols/RD/all/NCNC3063_0001_RD_warped2MNI152_T1_1mm.nii \
3063 TP2 control Male 49.78356164 579 /Users/pyeh/bin/longDTI_npoint/noninjcontrols/RD/all/NCNC3063_0002_RD_warped2MNI152_T1_1mm.nii





Please help
Thank you.

Ping
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Subject Author Posted

3dICC "dataTable is not rectangular " errors

pinghongyeh November 03, 2020 11:41AM

Re: 3dICC "dataTable is not rectangular " errors

pinghongyeh November 03, 2020 01:28PM