Hi all.
Wanting to run 3dICC to check for differences in the average signal across 19 different pre-processing strategies and I'm running into some issues with string parsing.
I'm running it on my local machine with the following:
3dICC -prefix Warp_ICC3 -jobs 1 \
-mask 'MaskofMasks.nii' \
-model "1+initializer+target+(1|Subj)" \
-InputFile 'inputfile' \
-dataTable 'Inputfiles.txt'
But it keeps throwing errors like these:
** Error:
Expecting 1 parameters for option "-model".
Have 3 parameter(s) in string "1+initializer+target+(1|Subj) -InputFile inputfile" instead.
NOTE that -InputFile in bad option above is not a recognized option.
** Error:
Error parsing arguments. See 3dICC -help for details
3dICC -prefix Warp_ICC3 -jobs 1 -mask 'MaskofMasks.nii' -InputFile 'inputfile' -model '1+initializer+target+(1|Subj)' -dataTable 'Inputfiles.txt'
** Error:
Expecting 1 parameters for option "-mask".
Have 3 parameter(s) in string "MaskofMasks.nii -InputFile inputfile" instead.
NOTE that -InputFile in bad option above is not a recognized option.
** Error:
Error parsing arguments. See 3dICC -help for details.
Hoping it's something simple I just missed.
AFNI version is Precompiled binary linux_ubuntu_16_64: Oct 19 2020 (Version AFNI_20.3.01 'Vespasian'), Inputfile.txt looks something like this, tab separated:
subject initializer target inputfile
sub-M68200328 EPI Kid_TPM MeanEPI_to_KIDSPMTPM_GM_M68200328.nii.gz
sub-M68200328 EPI MNI MeanEPI_to_MNI_Brain_Template_M68200328.nii.gz
sub-M68200328 EPI Avg_MNI MeanEPI_to_Post_MNI_Averaged_Brain_Template_M68200328.nii.gz
sub-M68200328 T1 Kid_TPM MeanEPI_to_T1_to_KIDSPMTPM_GM_M68200328.nii.gz
sub-M68200328 EPI MM_EPI MeanEPI_to_T1_to_Multimodal_Study_Specific_EPI_Template_M68200328.nii.gz
sub-M68200328 T1 Avg_MNI MeanEPI_to_T1_to_Post_MNI_Averaged_Brain_Template_M68200328.nii.gz
sub-M68200328 T1 UM_EPI MeanEPI_to_T1_to_Unimodal_EPI_Study_Specific_Template_M68200328.nii.gz
sub-M68200328 EPI MM_EPI MeanEPI_to_to_Multimodal_Study_Specific_EPI_Template_M68200328.nii.gz
sub-M68200328 EPI MM_T1 MeanEPI_to_to_Multimodal_Study_Specific_T1_Template_M68200328.nii.gz
sub-M68200328 EPI UM_EPI MeanEPI_to_Unimodal_Study_Specific_EPI_Template_M68200328.nii.gz
sub-M68200328 T1 TPM12 SPM12_Coreg_M68200328.nii.gz
sub-M68200328 EPI TPM12 SPM12_NoCoreg_M68200328.nii.gz
sub-M68200328 EPI Kid_TPM SPM12_TOM8_NoCoreg_M68200328.nii.gz
sub-M68200328 T1 Kid_TPM SPM12_TOM8_TPMs_Coreg_M68200328.nii.gz
sub-M68200328 EPI Kid_TPM SPM8_Kid_TPM_No_Coreg_M68200328.nii.gz
sub-M68200328 EPI TPM8 SPM8_No_Coreg_M68200328.nii.gz
sub-M68200328 T1 Kid_TPM T1_to_KIDSPMTPM_GM_M68200328.nii.gz
sub-M68200328 T1 MNI T1_to_MNI_Template_M68200328.nii.gz
sub-M68200328 T1 MM_T1 T1_to_Multimodal_Study_Specific_T1_Template_M68200328.nii.gz