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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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antoinel
November 09, 2020 09:16PM
I am using 3dMVM to analyze three groups. See the script below. How do I limit the voxels to white matter only in the output? See the output image below.

3dMVM -prefix Test5.nii -jobs 24 \
-bsVars SDS_deficit \
-qVars "Age,Sex,RMS_rel_av" \
-num_glt 3 \
-gltLabel 1 'nds-ds' -gltCode 1 'SDS_deficit: +1*0 -1*1' \
-gltLabel 2 'nds-hc' -gltCode 2 'SDS_deficit: +1*0 -1*2' \
-gltLabel 3 'ds-hc' -gltCode 3 'SDS_deficit: +1*1 -1*2' \
-mask IIT2.nii \
-dataTable \
Subj SDS_deficit Age Sex RMS_rel_av InputFile \
sub-control01 2 28 2 0.0023 sub-control01.ses-01.FA.warped_5mm.resample.rotate.nii \
sub-control02 2 23 1 0.0061 sub-control02.ses-01.FA.warped_5mm.resample.rotate.nii \
sub-control03 2 25 1 0.0035 sub-control03.ses-01.FA.warped_5mm.resample.rotate.nii \ ...
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Subject Author Posted

3dMVM Output - Limit Voxels to White Matter Attachments

antoinel November 09, 2020 09:16PM

Re: 3dMVM Output - Limit Voxels to White Matter

Daniel Glen November 10, 2020 08:48AM

Re: 3dMVM Output - Limit Voxels to White Matter

antoinel November 12, 2020 02:14PM