AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
November 19, 2020 01:50PM
Howdy-

Can you use the regular, ol' AFNI programs for this: 3dROIstats, 3dmaskave, 3dNetCorr etc.? That is, run these commands on the terminal, like with the system() functionality in Matlab, or just in the terminal directly? That strikes me as easier, but there are several AFNI programs for making/applying masks and averaging time series, etc. I am not sure about Matlab functionality, but if you provide more details about the files you have and what you want to do exactly with them, I can probably help out with AFNI commands.

A lot of this is described in this AFNI Academy YouTube playlist:
[www.youtube.com]
... with the accompanying slides/script: 
afni_open -aw afni11_roi.pdf
and this file:
[afni.nimh.nih.gov]

--pt
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Subject Author Posted

Extracting Time Series from Fit and Raw Data Files in MATLAB

Blankenshipak November 18, 2020 09:27AM

Re: Extracting Time Series from Fit and Raw Data Files in MATLAB

ptaylor November 19, 2020 01:50PM

Re: Extracting Time Series from Fit and Raw Data Files in MATLAB

Blankenshipak December 07, 2020 09:56AM

Re: Extracting Time Series from Fit and Raw Data Files in MATLAB

rick reynolds December 07, 2020 10:59AM