AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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ptaylor
November 24, 2020 09:20PM
Hi-

I stole the recipe for doing this, below, from what afni_proc.py would do if you included the option "-regress_run_clustsim yes" there (and why not have this done in your processing that way?). In the output of afni_proc.py processing, the generated script would essentially use the following to store the 3dClustSim results in your output stats* header for you.

Add the following option to your 3dClustSim command: 
-cmd o.clustsim.acf.cmd
... so that a 3drefit command is generated+stored in that output text, to be applied soon after.

Then, add the following commands to your tcsh script file, after your 3dClustSim command: 
set cmd = ( `cat o.clustsim.acf.cmd` )
$cmd DSET
... where DSET is your dset of interest (such as "stats.$subj+tlrc"). This essentially runs the script from o.clustim*cmd to dump information into your DSET of interest.

--pt
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Subject Author Posted

3dClustSim Results to Overlay Dataset's Header

antoinel November 23, 2020 09:58PM

Re: 3dClustSim Results to Overlay Dataset's Header

ptaylor November 24, 2020 09:20PM