AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 04, 2020 03:44PM
Hi Gang, here is my script. I am trying to see the main effect of loneliness, main effect of hamd and their interaction in my CBF maps. would you mind to tell me if I am doing it correctly?

3dMVM -prefix 3dMVM_test -jobs 24 \
-mask GM2mm_WFU_Mask.nii.gz \
-bsVars 'loneliness+age+gender+hamd' \
-qVars 'age,gender' \
-num_glt 3 \
-gltLabel 1 Loneliness -gltCode 1 'loneliness' \
-gltLabel 2 HAMD -gltCode 2 'hamd' \
-gltLabel 3 Lon_by_HAMD -gltCode 3 'loneliness:hamd ' \
-dataTable @FIXED.txt


Also, I try to run it and I am having an error in my table (data table is not rectangular) even after "fixing it" with the file_tool

tcsh -x 3dMVM.txt > diary.txt &

3dMVM -prefix 3dMVM_test -jobs 24 -mask GM2mm_WFU_Mask.nii.gz -bsVars loneliness+age+gender+hamd -qVars age,gender -num_glt 3 -gltLabel 1 Loneliness -gltCode 1 loneliness -gltLabel 2 HAMD -gltCode 2 hamd -gltLabel 3 Lon_by_HAMD -gltCode 3 loneliness:hamd -dataTable @FIXED.txt
Read 409 items

** Error:
The content under -dataTable is not rectangular ! 358 7

[1]+ Done tcsh -x 3dMVM.txt > diary.txt

file_tool -infile FIXED.txt -test
FIXED.txt has 0 bad characters

FIXED.txt file type: UNIX

file_tool -infile 3dMVM.txt -test
3dMVM.txt has 0 bad characters

3dMVM.txt file type: UNIX
Subject Author Posted

Statistical Analysis

LuisaBoh November 25, 2020 12:49PM

Re: Statistical Analysis

LuisaBoh November 25, 2020 01:55PM

Re: Statistical Analysis

gang November 27, 2020 10:06AM

Re: Statistical Analysis

LuisaBoh December 01, 2020 04:34PM

Re: Statistical Analysis

gang December 02, 2020 11:35AM

Re: Statistical Analysis

LuisaBoh December 04, 2020 03:44PM

Re: Statistical Analysis

gang December 06, 2020 10:56AM