Howdy-
Yes, we have moved away from recommending uber_subject.py and from using it in our taught class tutorials. It was written to be a GUI way to set up an afni_proc.py command, but it doesn't have the full breadth of options that afni_proc.py does. Instead, we recommend that people create their afni_proc.py commands from one of the maaaany examples in the program's help file:
[
afni.nimh.nih.gov]
... choosing one of the examples that sounds most similar to the kind of data they are processing. For resting state, looking at Ex. 11-11b might be best for starting.
In actual fact, working with afni_proc.py itself is a lot easier for interacting with people/us to ask questions, as we can send the code back and forth directly, make comments/suggestions, etc. with exactness.
Note that our full set of most recent AFNI Bootcamp lectures are available here:
[
www.youtube.com]
... and more specifically for afni_proc.py:
[
www.youtube.com]
--pt