AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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paul.hamilton
February 26, 2021 09:21AM
Greetings, Daniel--

At last circling back to this conversation and trying out your proposed fixes. I'm actually going to try out all of them on the full set of difficult data and see which one wins. In this context, three questions / requests for clarification emerge:

First, I'm assuming that T1_ns.nii means the SkullStripped T1?
Second, what does epi_am_un.nii.gz refer to?
Third, and the only substantive question in this list, is what is the least biased way for us to decide which approach wins this competition? Would it be the Dice coeff of the native-space anatomy and aligned EPI for each approach?

Many thanks!

Paul
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Subject Author Posted

toward an even more perfect align_epi_anat cool smiley

paul.hamilton December 08, 2020 01:51PM

Re: toward an even more perfect align_epi_anat cool smiley

Daniel Glen December 09, 2020 03:27PM

Re: toward an even more perfect align_epi_anat cool smiley

Daniel Glen December 15, 2020 11:22AM

Re: toward an even more perfect align_epi_anat cool smiley

paul.hamilton December 16, 2020 08:11AM

Re: toward an even more perfect align_epi_anat cool smiley

Daniel Glen December 17, 2020 04:42PM

Re: toward an even more perfect align_epi_anat cool smiley

paul.hamilton February 26, 2021 09:21AM

Re: toward an even more perfect align_epi_anat cool smiley

Daniel Glen February 26, 2021 06:41PM