AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 13, 2021 07:52AM
Hi, I am trying to utilize 3dGroupCorr. I am not sure of my commands are correct since the option to perform the operation is not coming up (see commands below).

Any guidance would be greatly appreciated. Thanks!

_____

shiva:/x/wmg15/jasmins/STRUCTSpt/GrpResults> afni -niml template_T1_dartel_strip_240sagvols_1.5mm_MNI.nii
Precompiled binary linux_openmp_64: Aug 19 2020 (Version AFNI_20.2.13 'Aulus Vitellius')


** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to P Taylor for caloric input

Initializing: X11[Moba/X v 12004000].. Widgets...... Input files:
session # 1 = fromCLI ==> 1 dataset
dataset count = 1
Time series = 0 files read
.[tc]sv data = 0 files read
Path(s) to be searched for plugins:
/cbdb/bin_openmp_64

Plugins = 50 libraries read

++ NOTICE: AFNI_ENFORCE_ASPECT no longer has any effect!

++++++++ IMAGE SAVE SETUP WARNINGS ++++++++
++ Can't find program ffmpeg for Save to MPEG-1
++ To disable these warnings, set environment
++ variable AFNI_IMSAVE_WARNINGS to 'NO'.
+++++++++++++++++++++++++++++++++++++++++++

++ NOTE: This version of AFNI was built Aug 19 2020 ++
++ NOTE: 'Define Markers' is hidden: right-click 'DataDir' to see it
++ NOTE: Use '-seehidden' option to see which plugins are hidden
++ Want your picture in the AFNI splash screen? Email us a square JPEG!


------------------------- AFNI Startup Tip (74/109)----------------------------
Want bigger fonts in AFNI, for a high resolution screen? Set environment
variable AFNI_FONTSIZE to PLUS or BIG (preferably in your .afnirc setup file).
-------------------------------------------------------------------------------
tcp_listen(bind) (Name AFNI_SUMA_NIML, Port 53211, sd 5): Address already in use
tcp_listen(bind) (Name AFNI_DEFAULT_LISTEN_NIML, Port 53212, sd 5): Address already in use
tcp_listen(bind) (Name AFNI_GroupInCorr_NIML, Port 53213, sd 5): Address already in use
++ NIML shutting down: no listening sockets
3dGroupInCorr -setA globalETAC.mthresh.ttest_FALFF.HVs_F74s.default.ETAC.A.5perc.niml
Subject Author Posted

3dGroupInCorr

jasmins January 13, 2021 07:52AM

Re: 3dGroupInCorr

rick reynolds January 15, 2021 03:07PM

Re: 3dGroupInCorr

jasmins January 28, 2021 02:35PM