AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
maitra
January 27, 2021 02:03PM
I wanted to also add that I tried using the following: 

align_epi_anat.py -anat mni_template.nii.gz -epi ZHRTS1.nii.gz -epi_base 0 -master_epi mni_template.nii.gz -epi2anat -giant_move

And it sort of works, however, the FOV for the mni_template.nii is larger than the one for the ZHRTS1 image volumes so it is not clear to me how to get the FOVs to match.

All I am wanting to do is to align the 12 image volumes in ZHRTS1.nii.gz to mni_template.nii.gz according to registration of the first volume in ZHRTS1.nii.gz to mni_template.nii.gz (within the same FOV).

Thanks again!
Ranjan



Edited 1 time(s). Last edit at 01/27/2021 02:17PM by maitra.
Reply Quote
RSS
Subject Author Posted

registering anatomical images for grids/dimensions that do not match

maitra January 27, 2021 12:24PM

Re: registering anatomical images for grids/dimensions that do not match

maitra January 27, 2021 02:03PM

Re: registering anatomical images for grids/dimensions that do not match

Daniel Glen January 27, 2021 05:31PM