AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 08, 2021 12:37PM
Hi-

If the alignment is good to start, you shouldn't need "-giant_move": that can push things further afield in the broadened parameter search. (Though I admit I am surprised to see that happen here.)

Just to check for other spatial information, what is the output of:
3dinfo -obliquity -prefix "$subj"."$cond"_SurfVol.nii  epi."$subj"."$cond".slicemocoxy_afni.slomoco+orig
?

--pt
Subject Author Posted

anat_epi alignment Attachments

JW February 07, 2021 05:20PM

Re: anat_epi alignment

ptaylor February 08, 2021 12:37PM

Re: anat_epi alignment Attachments

JW February 08, 2021 04:04PM

Re: anat_epi alignment

Daniel Glen February 08, 2021 04:21PM

Re: anat_epi alignment Attachments

JW February 08, 2021 06:02PM

Re: anat_epi alignment Attachments

JW February 11, 2021 09:10PM

Re: anat_epi alignment

Daniel Glen February 12, 2021 12:19AM