AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
March 06, 2021 10:25AM
I am not completely sure, but I believe you should use the -blip_forward_dset and -blip_reverse_dset options using your fmriAP and fmriPA datasets in addition to those options for spatial warping to the macaque template described in the MACAQUE_DEMO scripts. For the fieldmap distortion correction instead, you could use epi_b0_correct.py as a separate procedure.
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epi_b0_correct monkey data

Fabian February 12, 2021 12:08PM

Re: epi_b0_correct monkey data

Fabian March 05, 2021 07:16PM

Re: epi_b0_correct monkey data

Daniel Glen March 06, 2021 10:25AM

Re: epi_b0_correct monkey data

Fabian March 13, 2021 01:12AM