AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 23, 2021 12:40PM
Option "-polort 1" means to use the polynomial t^0 and t^1 as regressors -- that is, to detrend a constant (mean) and a linear slope. That is why you have two regressors. (I'm a little surprised CompCor doesn't do this itself, actually.)

The "18 vectors are constant" warning says that in your input time series dataset, of the 622,592 voxels, 18 of them were constant in time = 0.00289% . Almost certainly, these voxels are outside the brain. The point of this warning (it is not an error, otherwise it would say ERROR instead of WARNING) is for cases when a LOT of voxels are constant -- which is peculiar, unless some part of the data has been deliberately zero-ed out earlier.

A voxel time series that is constant in time will, after removal of the linear trend, be all zero. It is quite likely that these voxels were all zero to start with, but the program doesn't check for that as a special sub-case of constant.
Subject Author Posted

warning in 3dTproject: input data :: 18 vectors are constant

carolin31 February 17, 2021 09:55PM

Re: warning in 3dTproject: input data :: 18 vectors are constant

RWCox February 23, 2021 12:40PM