Good afternoon pt,


Thank you so much for looking into the questions. Below are my responses.

-AFNI version ("afni -ver")?
Precompiled binary macos_10.12_local: Jan 18 2021 (Version AFNI_21.0.04 'Titus')

-One first thing to note about your afni_proc.py command the QC: using "-html_review_style pythonic"
I actually have this line of code in my afni_proc.py. I accidently omitted the line while copy-pasting. The QC-report I mentioned previously was generated via this line of code, and in the report, the “qc_10_regr_grayplot.jpg” file is not being generated correctly. I can see the enorm plots just fine when I run the @ssreview_driver.

-Re. Q3 (because you did sneak a third question in!)(<= I know.. I did!)
Thank you so much for the explanation. It all makes sense now, and I will look to see how to use the line of code. Running the SSWarper before afni_proc.py makes a lot of sense indeed.

-Re. Q1: There should be a file called "out.review_html" in your *.results directory from afni_proc.py. That contains a log of all the APQC (afni_proc.py QC) generation. Could you email me that?
Will email right away after posting this.

Re. Q2: That Xmat failure is odd... I am not sure---that is probably a Rick-level question, and I will ping him.
Actually, Ann, what is your final degree of freedom (DF) count?

initial DF                   : 890 : 100.0%

DF used for regs of interest :   0 :   0.0%
DF used for censoring        :   0 :   0.0%
DF used for polort           :  14 :   1.6%
DF used for motion           :  24 :   2.7%
DF used for ROIPC            :   6 :   0.7%
DF used for bandpass         : 564 :  63.4%
total DF used                : 608 :  68.3%

final DF                     : 282 :  31.7%