Thank you, Daniel. This works now. I'm glad I found this out.
For the second part of my original question, i.e., does AFNI do automatic conversion when loading atlas ROIs, do you have any advice? I looked at Broadman area 17 from TT_Daemon on my MNI 2009c tlrc brain, it's roughly in the right location, but it doesn't look as good (e.g., a lot of zagged and missing part) as the newly fixed left V1 from the Glasser atlas. So I assume AFNI doesn't do automatic conversion, and the user has to make sure the atlas and the underlying anatomy is in the same space, right?
Thank you for your help!
--ts