AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 07, 2021 09:10PM
Dear AFNI Expert,

During the process of post-hoc analysis to probe 3 way interaction, I wanted to check the exact equation representing my model examined through 3dMVM.
Maybe knowledge of internal functions of the 3dMVM would help, but I end up asking for an expert’s help here.

In my 3dMVM script,
I have 4 independent variables.
(2 categorical, 2 continuous) and 1 covariate.

There was a significant 3-way interaction effect in several regions, A (categorical) x B (categorical) x C (continuous).

To probe the pattern of interaction,
After extracting the beta estimates of significant regions of 3-way interaction effect,
I decided to use R lme4 package for examining the same model that involves 4 way interaction and lower-order terms using lmer function with a random intercept for each subject. This is the first step I thought appropriate for probing interaction using emmeans/emtrends function or interact_plot function in R.

lmer(Betaestimates ~1+
+A*B*C*D+covariate
+(1|Subject),
REML=TRUE,na.action=na.omit,data=MyData)

However, the 3-way interaction (A*B*C) turned out to be not significant at p < 0.001, while it should have been significant if the equation I wrote above represents my 3dMVM model.

For reference, If I remove the 4way interaction term in the model like below, 3way interaction becomes significant at p < .001.

lmer(Betaestimates~1+
+A*B*C+covariate
+(1|Subject),
REML=TRUE,na.action=na.omit,data=MyData)

I’d appreciate any suggestion.

Thanks in advance,
Irene
Subject Author Posted

Equation representing 3dMVM model

Leehyun Yoon March 07, 2021 09:10PM

Re: Equation representing 3dMVM model

gang March 08, 2021 06:22PM

Re: Equation representing 3dMVM model

Leehyun Yoon March 12, 2021 10:00PM